Scaffold JGI25133J35611_10019982

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10019982
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2676
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030729	Metagenome	184	Y
F034754	Metagenome	174	Y
F095400	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100199821	F030729	AGGAG	VKVTKKKIEAILQQDERMKWVSLWYDRAVKQWVFVGGDSAMWSSSGTGVFRLDMLSVEEWVDYAYELAGRKRHVR*
JGI25133J35611_100199824	F034754	GGAGG	VKVGDLVDINQKRGTGSYESITPRGLGVVMRLEELEDLHYESIGTINLGPIVHVLLNTGETEGFHPTSLEVVK*
JGI25133J35611_100199827	F095400	GGTGG	MARYVTERDRVYLKLQRIASGCSLRAGEDLHPLNDDLIPWLKTNEDIDEYLNLLDILTLMR*