Scaffold JGI25133J35611_10004122

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10004122
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7134
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014809	Metagenome	260	Y
F058540	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100041221	F058540	N/A	MDEKNISFVKPDVSAPLQKRDSYLRVKEDEPTLVTVDNVEKINITTDGGIKEGVRVTCREVAVIKDGDDFETKADKDPKIKESYSTSTWYLLKDFQSASHWPKEGIFYWV
JGI25133J35611_1000412217	F058540	N/A	ISFVKPDVSAPLQKRDSYLRVKEDEPTLVTVDNVEKINITTDGGIKEGVRVTCREVAVIKDGDDFETKADKDPKIKESYSTSTWYLLKDFQSASHWPKEGIFYWVWKASDGLRWEQL*
JGI25133J35611_100041223	F014809	N/A	MATTITRTFDSTPTDKTYFSLTDNMSSSSLGNIQVPDGASRISRVDSAFCTGNAKGYQVVARLSGSNMSEQNFTLMGLDGDGADGAICQADATTDVNFPVGGVNNVDLQIAIQYGSGGSASASSGSVTLYFE*
JGI25133J35611_100041229	F058540	N/A	MDEKNISFVKPDVSAPLQKRDSYLRVKEDEPTLVTVDNVEKINITTDGGIKEGVRVTCREVAVIKDGDDFETKADKDPKIKESYSTSTWYLLKDFQSASHWPKEGIFYWVWKASDGLRWEQL*