Scaffold JGI25133J35611_10001725

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10001725
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11525
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F017933	Metagenome / Metatranscriptome	238	Y
F029595	Metagenome	188	Y
F037479	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_1000172517	F017933	GAGG	MQEAIMGISLVGFSTMISVMLFNSRKNDTLIRNLCERIAKLEGTLEARLK*
JGI25133J35611_1000172518	F037479	GGA	MEFNGFYNFGGGGTETVVGVANENLPSHTENVCANEKMLFTGQWANLSRQLIHITFHSFGSAQAFHKHDLRAYEAIQVYNVPIASVAIHVPAGETIGIHGMGTMWSAQDEDEYAIMGAKSGLFEHLPNSPNFNTDSYTRVTQAAAATVDLVVSAVDDDFAAYKITVSPVGAQVVDLFWTNAANGNVQFIGNLNFAGAGTFVYDFPDSLMRNPNRQGGKLRMTTSTAASTVVDVVGHIVTEGQ*
JGI25133J35611_1000172522	F012639	AGGGGG	MSANNSGLVLNCNCVYAANAPVATVQAATMQTSPVVAAVNELQVPLTENWIATDVYILVAAGGGTPTVINPVISMDKNRGRQLVQTPPLSSMLITNNTRPRFSPQPIGFEGGSIVRMFGTSTVVNGGAISTANFFVAISIV*
JGI25133J35611_1000172523	F015413	AGAAGG	MQSTDLEKQVNDLLTTTKFEQPEFEQLLPKGIFGKDMILGSAGTALSVQMGNIVGKFLPLGQLPSGTASILAGVLLQKFMGGNANVKKISEGIIQGGFATAMTPFVSGLIPSQFSQEVKTETTQEELNPLLKGVMW*
JGI25133J35611_1000172524	F029595	AGGAG	MKCFESPSGLRDTMMWHKRQSIRDFVRQKPMFSQLMQASKQCMAAHPELKNNVKGAIQCETIHPQTLSSFSNFTFHTHPHNIPYPSDTDKNTTTDLKKKYLLIGVVPQNKTYVFSDDDNFTKSIAII*