Scaffold JGI25133J35611_10001508

Overview

Basic Information

• Taxon OID: 3300002514
• Scaffold ID: JGI25133J35611_10001508
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12349
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035480	Metagenome / Metatranscriptome	172	Y
F035977	Metagenome	171	Y
F057667	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100015081	F035977	N/A	DLKLLQYGAHKTLTPGVQSLIYTLSCVEAEEKTLQMYCDVHGTCYMVTGKSGDVYSRMRPEWQQLKEARMRKQAIIARLEKWAGEGLEDSDELKEFLQ*
JGI25133J35611_1000150810	F057667	N/A	MDIFVDHWQSILFALLIAARAIFSLVPSDNPAVXIFGWIDIIITALVGGDKRKKKAKK*
JGI25133J35611_100015088	F035480	GAG	MSTVTVTGVNELFKRIDKIAKWSEKDSKALKDIGHRVGAVYGNYIKANVKDGSFEKSMFRGKNKKRGNLRRSGGTWLPNRNENTVLGGPRTNAIGRRKTKKSADGWYAHIVEKGDFGPRFGGKHKTQNSGVFSRGMKATESRSLKLQEILLRKNFAKYVRGL*