Scaffold JGI25131J35506_1002115

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1002115
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2914
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F008596	Metagenome	331	N
F021554	Metagenome / Metatranscriptome	218	N
F074966	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10021151	F002150	AGG	LVAIPATILAXEIXKXGTKASGEFLEQKLGYNFIDLVTKLALFYVIAFMIAKYMEAIIYFQGGLSTXAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTGAGKFNPPGWDKPYDYGTPEHQEAEPYLFPEKEVKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTLAIFSLLGLMVGVLSFSKFLGKFSLNRFQEENK*
JGI25131J35506_10021152	F021554	N/A	MIIEEIPFFTEFVLLGIILGFGYGFTKLFLNHAKDKNKVKRTERKQEKDHNLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLEGELNQARTLQNMNQ*
JGI25131J35506_10021153	F002100	GAGG	MSSFKPALIKPTYDVANFGHDNSLPLNCLSGSTVTLTPSTATFVQVLEDSRVPIDEVDLFIMDSDKMAMVYPANDTDFDTSWEWTPDMSAQAYQISFNFAVGMKVSAYTSGNFKISDVQVICKQIGGGEGDFTYLNKIIDPGMTNMAGVAEQVAIINFSTTVSAKVFDKPITFQIKVNTDNATGTYQTGIIPLFCYLSSAVPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNMVDTGXGL
JGI25131J35506_10021154	F008596	GGAG	MSGAWDVATATSIGTGTSKTQINGGSNLTKPTQATNLVEVVPYISSSGAMTAGESLAVTLELDSYSIDLLPKRIIVPPIQSGLGTTIVQINPLLEAYECSTGLQEGATSQFRIFGTNQVAPTVATNLACALHYSTTPPNRPEHFYHKPDDETGSITTATTTTGNSFTINDGMWLEDMYVSAFTAVYTVSQSLTGYGELSSNDFGNSLPLKIPIQPGCASLGATGTQATLAMASYHNTHMPMKTSCKINTAFTNDITSTGNVSFIMGVGYTKQ*
JGI25131J35506_10021155	F074966	N/A	NPSPNGSPRINPAGVINKWTAVGVGGLIYSVVGKQMKLPEASSIGSIAKKVIFGSAVGGFFDPPSSGGRITTYAVTPNVRTQNIAQVRTQYARRMRNVGYVPPDSFDYSTGSAFRR*