Scaffold JGI25131J35506_1000758

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1000758
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5515
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029244	Metagenome / Metatranscriptome	189	Y
F030887	Metagenome	184	Y
F044733	Metagenome	154	N
F092729	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10007581	F044733	AGGA	MANAGRKIVSGVNTLVTVKSVKLDPNSKAYKKAIARSKGVLNGSPDIYQNTTKLMNTKLARKLGYX
JGI25131J35506_10007583	F092729	GGAG	MTSKRYQIQQKLKPLYEIRTRVGTQFGKAKEANDTDTIEIWERVWFAVTNEIVALHEDAHELKEKEIK*
JGI25131J35506_10007584	F029244	AGGA	MTMKVSNLKFTTEMLNDVWKGHSVEMPKTDALRIVSNPKAAADFIAEFGDVEIVLNTEYSPRWKVAAFAEGRAEYGKLKQAYCDQFGSN*
JGI25131J35506_10007589	F030887	N/A	MINATHNIRVIKHMDGGYDTFANFTTVQDALDYMRRLDFANDTWYIIDANDNRLKMNDQGKLVVFNSLIGR*