Scaffold JGI24700J35501_10918508

Overview

Basic Information

• Taxon OID: 3300002508
• Scaffold ID: JGI24700J35501_10918508
• Source Dataset Name: Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4281
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031544	Metagenome	182	Y
F038732	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24700J35501_109185082	F038732	GGA	MRNKKATGDDDVPGDMLKLLGEGGLKILTKLINTIYETREWPKDFTEVTIIALNKKTQTTKCSDHRTVSTAHTAKKIARMLRRRIERKIEDVLGEDQFGFRRG*
JGI24700J35501_109185084	F031544	GGAG	LDYTLVKHRFRNSVKDVQTLPGADTDSDHNLLFAEVRTRLKTIIRFHNSRPRLDLEKLYGQRQRVQDTLEEKIGAIECESGNVEVQWKSIKECVLDTISDLVGKVEKRARKPWITQ*