Scaffold JGI24703J35330_11668150

Overview

Basic Information

• Taxon OID: 3300002501
• Scaffold ID: JGI24703J35330_11668150
• Source Dataset Name: Neocapritermes taracua P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1707
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016682	Metagenome	245	Y
F080194	Metagenome	115	Y
F095677	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24703J35330_116681502	F080194	GAGG	VSISVVKCSEVLQCSDGPSNEVSNIIRRHIDNRKLLLICILLLSHSFIFFRLYFLSVCIWLYNDKID*
JGI24703J35330_116681503	F095677	N/A	MTKLINTIYETGQWPKDFTEVTMIVLKKKPQVTKCSDHRTISFIAHTAKIVAKILRRTEKKIEYVLGEDQFGFRRGKGTRNAIGMLGIILE*
JGI24703J35330_116681504	F016682	AGCAGG	VKYADDLVLLAKEEKVLQDMIDKLIEIGGCCGMEMNVEKNKSNENLKTTIPSKNYDRPKTTRECGIF*