NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24703J35330_10952233

Scaffold JGI24703J35330_10952233


Overview

Basic Information
Taxon OID3300002501 Open in IMG/M
Scaffold IDJGI24703J35330_10952233 Open in IMG/M
Source Dataset NameNeocapritermes taracua P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001642Metagenome659Y
F007175Metagenome356Y

Sequences

Protein IDFamilyRBSSequence
JGI24703J35330_109522332F007175N/AMLYREIITVCSQIHTKHINKLCGQNVELLNVKLAVYKDPVRTAQ*
JGI24703J35330_109522333F001642N/AMLYREIIAVCSLIHTKHTNALCGQSAEFLNVKLSGTYRNHWALEG*
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