Scaffold JGI25128J35275_1034428

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1034428
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1161
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038639	Metagenome	165	Y
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10344281	F038639	N/A	PHTYEVIMKYNKKQKSLSQPVIDLLSRMSKLVDQGLTPEEAVEYMTDCEPEWRCSRGYQATKGGLRQARQRLERRVEMMNQVNNGVTVFINHKPTK*
JGI25128J35275_10344284	F082546	GAGG	MKIESKAIIQRRIRNIEADIKSVRNNGNTLRMRLLYAQLSAATIKLASS*