Scaffold JGI25128J35275

Basic Information
Taxon OID	3300002488 Open in IMG/M
Scaffold ID	JGI25128J35275_1000698 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002488 Open in IMG/M

Scaffold ID

JGI25128J35275_1000698 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_60

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10364
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (81.48%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10364

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (81.48%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F012507	Metagenome	280	Y
F016324	Metagenome	248	Y
F026439	Metagenome	198	Y
F057769	Metagenome / Metatranscriptome	136	Y
F093834	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10006981	F016324	GGCGG	MHSSVRRPPLRPPKVGDVVRLSGPGGMGRTYTKVHGVGIVTNIHKPEQARKLYEVKWLKSEERMRFHEEDLIIVSDVDR*
JGI25128J35275_100069811	F057769	AGGAG	MTIEIGSIVTNVGFIQGRNNSNHGLVVSLLADGKIARVFWASTQKSGFCSVVDLQVVS*
JGI25128J35275_100069812	F026439	AGGAG	MASQLDTVTLWETAREQFIDLILPMIQEDEQRLGHVDTVARSEAWSNFVDALHYSDSISDWQVANWEHPPCCD*
JGI25128J35275_100069815	F093834	AGGAG	MEFVIYGTLVILTTFVIVAINEVAKEVKSMRDVFESHYQLERVPVRENVYKRKGVEL*
JGI25128J35275_10006982	F012507	AGGAGG	LSQTWTDKISVGDLVYSLRDAKPAIVIDKQETARAKYGDIANKRWRFKLHIDGEQGWLDEVRLRTQYKLP*
JGI25128J35275_10006985	F009562	AGGAG	MLAIPLIRTDDDTNVTPIERTALACEQVITAMMMQATLDDPAVSDAEREVYTTLSVATIIPAEA*
JGI25128J35275_10006988	F008590	GGAGG	MQVGDLVTYCFQRPRWRKGESVSVGIVVETGKYTGNTDVKVLWTDKAEPETEASHHLSIVDKSLTT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25128J35275_1000698

Overview

Ecosystem & Geography

Associated Families

Sequences