Scaffold JGI25128J35275_1000089

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25128J35275_1000089

Scaffold JGI25128J35275_1000089

Overview

Basic Information
Taxon OID	3300002488 Open in IMG/M
Scaffold ID	JGI25128J35275_1000089 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26381
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (92.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030894	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_10000896	F030894	N/A	MDFIKYSEFLLRKLRERQQDLTQTLAAGGAQDFVQYQRIVGEISGLNFAEQEITALHGRMEDVEDD*

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