Scaffold JGI25129J35166_1070539

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1070539
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 641
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025764	Metagenome	200	Y
F034595	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10705392	F025764	AGG	LEKITSVKDLIRVDKDYKDSSRSSASVCYGGLAGMLVATVKWADKFIRKDEPALALKLLEQALKENGKVNDVVERYNRRFNAESEKV*
JGI25129J35166_10705393	F034595	N/A	QKIMNINDRLDNMSKEELISLVKEIKITCESNRSIDSPIRNTLNFILNLIKGIL*