Scaffold JGI25129J35166_1029522

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1029522
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1171
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013189	Metagenome / Metatranscriptome	273	Y
F100974	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10295221	F100974	N/A	DIGRMYNFVITASTLTLTGKVPANGEGFVISPDNATLTLLQTFAWDNYGGTWADASTAWGDVAFAPSAVETGQNQPDAGSLTLSGSVPTFQLSQLWYVPSGSLSITGFVPSALEGFNFSPSAGSLTGFGGGTLWDDGTGNWTSHSEAWGLGTLSPTAGVTYTFVIDPQGNLVFTPYDPAWPQVGQPKYISEIIMS*
JGI25129J35166_10295223	F013189	GAG	MQEIEKNLKFVAQEHTLAKNVAEHLEKKYPGWLWAVHVMDGLAVVKSMRLSGNWGFVLHEDKIDNDYKAVTRAGGEXLERYRQSTNGFNQTKYSDLVMDNKTGQLNGDFS*