Scaffold JGI25129J35166_1022700

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1022700
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F086164	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_10227001	F041493	N/A	QQQDYYTKMIDSNEDHLYTTIYDSVSGDPFRVKTERVGHYLSKIKKESKLEGKQLVFTGEWIPSFVKTKQEIIGSPSSSEPKQIASVGQPKAGKRRRGRRGRKK*
JGI25129J35166_10227002	F028039	AGGAG	MTTDIKTERWETIVKEIKFENRWNTTLEKHLKDNNLTELPEPEWSDDPTMAYIYLPAKSLNGEVVRMDKTKARMFPESIVGYLEKGGLMKLPAKVEASQSSQSKEQLPKMETEKPKSQKIKLPKIGE*
JGI25129J35166_10227004	F086164	AGGAG	MAFGHEKLAVDATVRSLTVPNDVNFAQIKVETAAIRYRIDGTDPATAEGVLVSAGDAFTVYGSDTLNTIKMVEATSTDAVINVSYGTANTGIHGVIINT