Scaffold JGI25129J35166_1000083

Overview

Basic Information

• Taxon OID: 3300002484
• Scaffold ID: JGI25129J35166_1000083
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40912
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (70.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021088	Metagenome	220	Y
F074749	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25129J35166_100008342	F021088	N/A	MDIWRLGHRRARKEATIGDLVICVDEARRNDVPSIHPKRFIGLVLDKSITVYKIQVVGTGDEIYWPESATYLWKETK*
JGI25129J35166_100008344	F074749	N/A	LFLCACKEDPPSEVAPDYGDVYFYIGCYWPDPADLSWALQPAIWRCFENVETELLSGFLYLELENANSLYLCGENLTLRSGIDMYDNLISYITRDKYDCLHITEDTNEGNSFDWFWEESINTLQIIWRPDDEDHKMITLVIKDEEYNQVVRSIVYYKTLLPN*