Scaffold JGI25132J35274_1028327

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1028327
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1284
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008252	Metagenome	336	Y
F020919	Metagenome	221	Y
F068225	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10283272	F008252	AGG	MSNKFYQGWLGLWFFYDDEISIHWDRKNEFDVYQNHEKKNSFTVVGTMTPKQAEEQADEWLADVLQEEKLRHADAF*
JGI25132J35274_10283273	F020919	AGGTGG	MPELVIKTAKGNGDLPKNHGRSFKALTLFDALKDTTVIEKFNKQFEKEFSRPSIFASPTKAPRS*
JGI25132J35274_10283274	F068225	N/A	ELKCIKQNSINISPLQISWNYNNFRHGGKNYYIVQDTRSKVLKLYDGDKGREIKEKGFLYGGQSLILPPPTKWDDLQSFLFP*