Scaffold JGI25132J35274_1002700

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1002700
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4609
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017657	Metagenome	239	Y
F082820	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10027002	F082820	N/A	MRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKNYAIGQVQKLLTDQLSKSIPSLPDATGDVVPINSVPAIPKF*
JGI25132J35274_10027003	F017657	AGGA	MMMDNNRKEALDKASKAKQKMMVQAEMMKQLQPTVPEVTADNIDLQPMINPNPKPEGPVINSNVFNAGNLYPGVSGTSKLAANWNPMMDPAAG*