Scaffold JGI25132J35274_1002543

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1002543
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4740
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000724	Metagenome / Metatranscriptome	919	Y
F000896	Metagenome / Metatranscriptome	845	Y
F013960	Metagenome / Metatranscriptome	267	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10025431	F013960	AGGAG	MYKRDDYYYSRIQPILLMKEMDENYQAETDLVRSIMKECISEMIVRTRHELAVANECLWSLNDRDEVWYGFSHSDRVHEIRNIIETTDFERKFLQAETELVTINRLTECPKNDTVRQYMKMNEKLAEGMVA*
JGI25132J35274_10025434	F000724	AGGAGG	MPKKEKVWTMGTKGPIGPWVWHVWIKGKKKPERMIAFDIQHIKDQLEGQQMTKAVKQPEEKTTFKTMPLGPNGGGEVSRPADYDAGFKVLRKWVDENGGPPEEIRQKLRELWIDYEKAPQKTTRYSAXKKGRHKI*
JGI25132J35274_10025438	F000896	GGAG	MTDKINLVINLSILALLIYLAVSVKQLQDKVFPDPNIMIPLTSMESKTELEYNIRQFLNNVLEQVIEEQENQ*