Scaffold JGI25127J35165_1015026

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1015026
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1930
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F063764	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10150264	F063764	GGAG	MAESTKFFRQKKGQWVWIFDVETNRKKKVELQLLLDKINHALRHESRKYFALKEERDAFAKDCRTWDQG*
JGI25127J35165_10150265	F000999	AGGA	MDIEKIIKEVKQIEEQSEFIVSWFAKKYQKTIRRVGHLNKIGCRTWEDYKGNKLMCFWDPVINRYTTCINPVITYKNKRH*