Scaffold JGI25127J35165_1005520

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1005520
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3338
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AAA164-I21 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032077	Metagenome	181	N
F051140	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10055202	F051140	N/A	MLVEQVTDTSEKECDITLNREWCKEQVDRLCAWEILRRYVLHETSVAVTNEELCDTIGVSSTHIIRLLKSVQKRLISNNDN*
JGI25127J35165_10055206	F032077	N/A	ETSIELKDRMRDALAPMLAMEQERTAKNSLANNNPQRWLAAASMFLAGSSMHDVKMKLDMHHYIARRINGIVKTCDEARVFRQERAMQLASTIDEISSIGEKIAASYLDGSAEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNVQKIEVRHITTPEEAMSLIDALPEAEVIDVEEDG*