Scaffold JGI25127J35165_1000742

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1000742
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9471
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F005491	Metagenome / Metatranscriptome	399	Y
F011658	Metagenome / Metatranscriptome	288	Y
F014834	Metagenome / Metatranscriptome	259	Y
F050307	Metagenome	145	Y
F082545	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100074214	F050307	N/A	MNKDLKKRIKEFNKIKYPNDNSKRIIIASLKPAVTAAPKNK*
JGI25127J35165_10007422	F082545	N/A	MDFTYVTVLDFASGKVYQYNLADVGDNYLFEDKDEPQVEEVEQLLIDQGHELDDSEWMIHADPTINKIKL*
JGI25127J35165_10007423	F014834	N/A	MKDTNEIEKQLQRKADKYIEEKAQEMXNIYQEINKYVGTSQNFYDYITHYNQYKDARPEDKREHVSYVEPRQVKKKFELELAMNYKQRLVAKYTKELIAKLDIFE*
JGI25127J35165_10007424	F004523	N/A	MEYLSTEIKSAREAMTVFKILGIKDVTTDRQRKNGTQVFELPIQQMYQSLIPKPLRFATYKAGYVRNISEYNSSPYQINKTKVRPAGNGYHYKGVERILIPSWEDRLIYLAKFIIKNYYKKPTYLINDYVIKCLKEAYLRDYNNQPSNRLPFGDIVHPDSSPVDDIQVIINGHRYNLS*
JGI25127J35165_10007425	F005491	N/A	MSTFYKDTRYNGKLVRLEDVVDETYQRALKTIDDSFYELIGTSESNPDEFYEDYHEAFELVIEELKQFIYNK*
JGI25127J35165_10007428	F011658	N/A	MKTLWQQLKPEIKQSLKDQQDKYPSMVEGVKISLKENYFWSHLTIGQARDIVYFTDLTLASLSSYDWSYGEKFLVCED*