Scaffold JGI25127J35165_1000424

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1000424
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12718
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (37.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F030052	Metagenome	186	Y
F039092	Metagenome	164	Y
F059877	Metagenome	133	N
F074047	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_100042420	F074047	N/A	MSKKIIGETVETIIDKIDEVLVDYMFDYGNYEETDDRFFNDKEEMFCQVIEELNNRINNIK*
JGI25127J35165_100042422	F030052	N/A	MDNNNDMKIKLKELEALLVSHDWYYMMSDDNYWYKQGRKSFELITKLMFELKDGGYYTEANELYDKYSK*
JGI25127J35165_100042423	F039092	GAG	MVVITPKRTSCMINIVNNMTVTIKQIGKTYKVSDDNTVKVTHDHDAVVSVCGEYYKNKYTGEWLSELEAEQAMIDKYEEDESNKYY*
JGI25127J35165_100042424	F059877	N/A	MMNSKFIATAVAATLALTSCEKTDYDVQFDRDTHVKIMSDNSVSTYAVSSCTGKDTSFTVDFGVAMCINVANLPGIDDVRYDEYEFYAMLDGRKVKGFQNLKDQVGKLSQGIIEGNINMQLSGHDDLAVYLLHENMYKAQFFVENSDGQIFELQLKEVY*
JGI25127J35165_100042430	F004523	N/A	MKYKVTTATEALQVFDMLGIKNVSTRRQKKNGTQVYELPIQQMWQTCVPKPLRFACYKSGYIRNVSDYNSSAYQINKTKKVEVNEYHNYYERTERILIHDYDKRLVYLANFILKNYYQKPTYLINDYVIKCLKEAYLRDYNNQPSNRLPFGDIVHPDSSPEDEIQLIINGHRYNLSEALNEGF*