Scaffold JGI25127J35165_1000360

Overview

Basic Information

• Taxon OID: 3300002482
• Scaffold ID: JGI25127J35165_1000360
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13838
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038639	Metagenome	165	Y
F080023	Metagenome / Metatranscriptome	115	Y
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25127J35165_10003604	F038639	GAGG	MKYSKKQKSLSQPVIDLLSRMSKLVDQGLTPIEAVEWMQEIEPQWRCSRGYQATKGGLIQARKRLERRVEMMNQVNNGVTVFTNNKPTK*
JGI25127J35165_10003606	F082546	GAGG	MKIESKAIIQRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSAATIKLASSK*
JGI25127J35165_10003607	F080023	GAG	MKNFTIQIAPIRAPYMRERQDAVPTVCKKYVNGKVEYHEFRWNNPKAGRNIMWKDNPDTIEEREQYKQQFADRVQRAFDKANIRFFKHYDGINFEDEIVRVYAPYPDLAPNATVTVYSQRVHEYNAHRDFLRDIVSKMNIQFNTLMCVLQQGKYDLAKGSLYKLNKYMFDLQSMCRPQHHEVVFKGKNNPLTANLR*