Scaffold metazooDRAFT_10907144

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold metazooDRAFT_10907144

Scaffold metazooDRAFT_10907144

Overview

Basic Information
Taxon OID	3300002476 Open in IMG/M
Scaffold ID	metazooDRAFT_10907144 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from San Paulo Zoo lake, Brazil - NOV 2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1560
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location Name	Sao Paulo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F005878	Metagenome / Metatranscriptome	387	Y

Sequences

Protein ID	Family	RBS	Sequence
metazooDRAFT_109071443	F005878	GGAG	MITDAHPFKCGNCKKVTAQRLINVYDSEIVEGEKVWLCECQNCFEQRLIDPTERLANKEDDITRCDQCGNYKMKAAKCRICLIAAGQERIKELYWTGGATMERFVDADI*
metazooDRAFT_109071444	F000645	N/A	MSNYLDDYVSVQDRLKEFINAYPDYRIKSHVLEESLIPTCDVYIVKVELYRTEADAAAWTTGLSSESKSKQYALELAETGALGRALNLAGYFAKPAQTPKKPIQTTKPALAEFVKEQRPNDPEPIVWDVSQMVEELGAEVVDEIPLCAGGDGPMVLKSGIKEDKEYRGWVCPTPKSGHPAKWMRINSDGSWSFQK*

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