NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LO132_10002858

Scaffold LO132_10002858


Overview

Basic Information
Taxon OID3300002465 Open in IMG/M
Scaffold IDLO132_10002858 Open in IMG/M
Source Dataset NameAnoxic frehswater biofilm from Lago dell Orsa, Frasassi caves, Italy
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPennsylvania State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7900
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Microbialites → Unclassified → Freshwater Lake → Freshwater Lake Biofilm Microbial Communities From Frasassi Caves, Italy In Anoxic Conditions

Source Dataset Sampling Location
Location NameFrasassi Caves, Italy
CoordinatesLat. (o)43.3833Long. (o)12.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008802Metagenome327Y

Sequences

Protein IDFamilyRBSSequence
LO132_100028582F008802AGTAGGMVDGVAFGPGGERIAIEVKSPRDDIVRGIGQCYEALAWGYSRAVLVTTSRVAKKLRKRFFQRRGMKLVGVDAKARIHRYDPEGWRLLN*
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