Scaffold LO132_10000038

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LO132_10000038

Scaffold LO132_10000038

Overview

Basic Information
Taxon OID	3300002465 Open in IMG/M
Scaffold ID	LO132_10000038 Open in IMG/M
Source Dataset Name	Anoxic frehswater biofilm from Lago dell Orsa, Frasassi caves, Italy
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Pennsylvania State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	30075
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Microbialites → Unclassified → Freshwater Lake → Freshwater Lake Biofilm Microbial Communities From Frasassi Caves, Italy In Anoxic Conditions

Source Dataset Sampling Location
Location Name	Frasassi Caves, Italy
Coordinates	Lat. (^o)	43.3833	Long. (^o)	12.95	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074280	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
LO132_1000003825	F074280	AGGA	VTYSVESLRRVKASLSYLWIGALSALVVIVLERLTVAFAGSMLRTEIYSIHGFSHIFFGIGLASIILFLRPKSTLGVVILGVLVAGIAWELHEVYWLTGEPMDSLEDVVLAILSASAFLCLMRGKDGEPAR*

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