Scaffold JGI24768J34885_10010684

Overview

Basic Information

• Taxon OID: 3300002447
• Scaffold ID: JGI24768J34885_10010684
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3033
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter → Chthoniobacter sp. 12-60-6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055440	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24768J34885_100106841	F055440	N/A	GPLAALQAADTTKPVEPMPAEFKTKLQVTLVKHLNQLLKDDGSITEMKGKTSEGNGALAFYLMFEVTGEPKFRQAALTLADQVLKDMRATKHGVLPIKEKDKPGGKTIIGGGPPALGAYTSGVAYILHKEGGRSDDLKYIATVLDRYPWSEEGWFASTIDVDTGESKLPMTKPAIINKTAAVAMAAGIVSGYVGEIAPELSASLKRKADKCIYSQIIPAQLEDGFWHYSLLDKDPKDKDVLGYFMLTTKELMDLQKFNPTFREEKLTAAVKKAQAFALKHIAPMTDPNTGTSTSEHATRGTPTHYAIKEDLKRSFQLGLVLIGGGHTDEGIKIMTTALDHFPIGNAGQDGAHAAEPSALILSGF*