Scaffold JGI24768J34885_10000080

Overview

Basic Information

• Taxon OID: 3300002447
• Scaffold ID: JGI24768J34885_10000080
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24404
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F012670	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24768J34885_1000008045	F001915	AGG	MEWTLAHPLHDVDDIVELADSVFGMEADGILTRDRNVFRKNVTITATVQLFDKGKEFLAVCRPVDKSVDNLLAYCWFDRGGYTTYAXEEISNAKFHHVDLSLPVRQRVKLIHEMIDQHILWAHSWGIPVXCSTSIRSEHDGFMRIHKKRGFTTNGSYAWIRTENAIKGLT*
JGI24768J34885_1000008046	F012670	AGG	MKKPKDADILFGEIRPEGSNVTNPEELEKRKHYMRMKRAEKRAMGLATGEKFPKQEASKPQQRQQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNREEEVSADDALDDFLTALRKV*