Scaffold NAPDCCLC_10094654

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NAPDCCLC_10094654

Scaffold NAPDCCLC_10094654

Overview

Basic Information
Taxon OID	3300002446 Open in IMG/M
Scaffold ID	NAPDCCLC_10094654 Open in IMG/M
Source Dataset Name	Oil sands microbial community from Northern Alberta which degrade Naphthaline
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1423
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Syncrude tailings pond, Wood Buffalo, Alberta, Canada
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.55	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034978	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
NAPDCCLC_100946542	F034978	AGGAG	METIQIRVSKDALIEFKESVLWADFVEELKAWKEGFNREQLSIVDDAEANNPSTASVLLHMGDLNGRQKAVDYFLSLPDVFLSLIEEKKEEEEKDGRDKTD*

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