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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002446 Open in IMG/M |
| Scaffold ID | NAPDCCLC_10026362 Open in IMG/M |
| Source Dataset Name | Oil sands microbial community from Northern Alberta which degrade Naphthaline |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | McGill University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2613 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Syncrude tailings pond, Wood Buffalo, Alberta, Canada | |||||||
| Coordinates | Lat. (o) | 57.02 | Long. (o) | -111.55 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023098 | Metagenome / Metatranscriptome | 211 | Y |
| F033445 | Metagenome / Metatranscriptome | 177 | N |
| F058173 | Metagenome / Metatranscriptome | 135 | N |
| F068794 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| NAPDCCLC_100263621 | F023098 | N/A | KDGACGMDEQTERRQTWVCGAHHELVESLRDINQKLDGMIVRQIAYADTSARIEEKQEAIERIVTNGLSHNVANITKRLDIFCDEVKKRLDELEEFQWFRLPITRLRDSIFWYLFKLAAAGGVLYLIIHYGKEMVQGTFK* |
| NAPDCCLC_100263624 | F068794 | AGG | MDKKEKGFIFNHKTITIRGSFINMLFTMVLMTLFIVAAFRKEVADNLKMIAELIIAIYAISYGVWQGKKFLEGKEKKKEEEPKE* |
| NAPDCCLC_100263625 | F058173 | GGAG | MKMQYWIAIGVTAAIIVIVAAFFWGRYHPDPDVIGRLTDQIRLETIKQYDQRITDLNSQLKISQTAYIESQKRYDTIIKKIKELKDGKDNIKPPADSAELTARFNNLGYTVTGK* |
| NAPDCCLC_100263626 | F033445 | GAG | VAQYEVSVKELSTQIESLKTQVETMSKKFDETMKQLETERKIASEKDKARLEEIKAAGKPQWTMLFGGFGAGALLVGALVLLL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |