Scaffold NAPDCCLC_10025461

Overview

Basic Information

• Taxon OID: 3300002446
• Scaffold ID: NAPDCCLC_10025461
• Source Dataset Name: Oil sands microbial community from Northern Alberta which degrade Naphthaline
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32021
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Syncrude tailings pond, Wood Buffalo, Alberta, Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024821	Metagenome / Metatranscriptome	204	Y
F056712	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
NAPDCCLC_1002546121	F056712	N/A	LSVRVVRRFKDGMAVLVGLLENIEKGLVRRLMKGSQKQPWLIVFLIVFLSMNKKDNNKKKDEQEKDENYWRVLGGL*
NAPDCCLC_1002546124	F024821	AGG	MEGSTREKFIHTLMQYKEKFGQEKASAIQEKFWQSREQIVADSASEIDWFPSWKKNQILEDLLAKTYLDLIAEMEREGHS*