NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NAPDCCLC_10010208

Scaffold NAPDCCLC_10010208


Overview

Basic Information
Taxon OID3300002446 Open in IMG/M
Scaffold IDNAPDCCLC_10010208 Open in IMG/M
Source Dataset NameOil sands microbial community from Northern Alberta which degrade Naphthaline
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61183
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (94.03%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameSyncrude tailings pond, Wood Buffalo, Alberta, Canada
CoordinatesLat. (o)57.02Long. (o)-111.55Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055836Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
NAPDCCLC_1001020857F055836N/AMILLRGPLLVALSACRLFKFNCIFTVYPGSQKDIDGYLPPGFKWAKHLASGKPFVAGVITTGNGLGRGLVLAVPNTVEQFKTDRKLVGNIMKRLKLTKTVTGAKTIAVAGQGPRFFKSHFPYEQPFVYGLRGRVFSVVETVERVAERHNLPKAGSTVAILGVGEIGEAIIRNLEEKGYRAVGIDIQIKDGRVQLCSEGLKRLKEADLVVVQTPRGDDVVPYYADLKKTAILVDDAHPRITVKPDEVRFYKVAIGRAGVEFKPPLPGYEKYWIPGCVHESLVVAESGKADMSQEEFNRRSRELGFFAHLVDDR*

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