Scaffold B570J29032_109952445

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109952445
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5742
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026210	Metagenome / Metatranscriptome	198	Y
F049419	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1099524451	F026210	GGAG	MSPILGANPLDYDATYPQVAQSANDDAKIFIMERNEGKEVMFQIEDGTQFYGKISSVPNSEHYCVVVDRNGTPWEWYVREEAIHFVE
B570J29032_10995244518	F049419	N/A	MKLPKLNLLDLLTTYIFFGLVYGAVVTLTWNYLFEPTFNIHLSFLQGFGIHLITRILFGNTNTNYISNFYSQKTPDLDKIDSYLKEIQEDLDRESDEVEKQYEDLNKKD*