Scaffold B570J29032_109942982

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109942982
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3917
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003393	Metagenome / Metatranscriptome	489	Y
F005348	Metagenome / Metatranscriptome	403	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_10994298211	F003393	GAGG	MAATIMNMEYVKVDILTAGQLMVDDFILVDNEVVSIVEIVSLTDGYTLEIINDFGERETIQVGEYDQFDLMMFQ*
B570J29032_10994298212	F002515	N/A	MKQRKTKEELRILMELRRSNAASSIPSKKKYDRKKCQSLMLELKKERGLHHD*
B570J29032_1099429823	F005348	AGG	MINSVMSFDCDECNGQGLIFWGNELDYDVEKCECENFTLGTLFTSGEAN*
B570J29032_1099429826	F002598	AGAAGG	MATKLYTIEGLLIGKTYRSTSRHFEGEIVSAEKRDGVWYGENTDAYLIEINTRTLRNKFATIAVKIGE*
B570J29032_1099429828	F000808	AGGAG	MEYNYSITTSYDGETVNILRVSDMLEAVDAWTKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGKVAIK*