Scaffold B570J29032_109929335

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109929335
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2993
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F018928	Metagenome / Metatranscriptome	232	Y
F045545	Metagenome / Metatranscriptome	152	Y
F070870	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1099293352	F018928	AGGA	MIIRSLNTMEKIVSKNENLIWHAWDVIDLKESDTAKTSPMGIRIKNKWYLHRVYKPGRNGWDIPNKYKD*
B570J29032_1099293357	F003688	GGA	MYTEEMRRAVHSITPPKRFGVEIIDNEHFLTVKLDERKFLHMVHDDKISALQYVVKLKKALEECGAIVLVTREAVK*
B570J29032_1099293358	F045545	GAGG	MIKQIALFFICKFKSHSLVDAGSCPFTGKNYVACLRCGATITK*
B570J29032_1099293359	F070870	GGAG	MKKKTKIIILIVLSFLTAVSLWTAANFKKISDLDIFDIEEN*