Scaffold B570J29591_1005042

Overview

Basic Information

• Taxon OID: 3300002404
• Scaffold ID: B570J29591_1005042
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1073
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017447	Metagenome / Metatranscriptome	240	Y
F041609	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29591_10050421	F041609	N/A	NTVDNFGTETYEPSNIIFMKPXDVPSNGLLKYNNEDGGDSFQYRLANVEQITWFTLTVYNQDNELIPNFSDYILLLQFIRHKTEEGKVEILLNSLLDYVKQIYLMISHFLFPAMT*
B570J29591_10050422	F041609	AGCAG	MKPIDVPSNGLLEYNNEDGGDSFHYKLANVEQITWFTLSVYNQDDELIPNFSDYILLLQFIRHKTEEGKVEVLLNTLVDYVKQIYLMISHFLFPAMT*
B570J29591_10050423	F017447	N/A	MNFGSRVVSMFNRAAPKISRGIGQVADIGRNIGQVVKHGRNIGSIANQISGGRLSQSPIGQKIQDAANKIESGANFISGNEDRAQNALSTISRKIN