Scaffold B570J29645_102800

Overview

Basic Information

• Taxon OID: 3300002390
• Scaffold ID: B570J29645_102800
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1072
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000331	Metagenome / Metatranscriptome	1285	Y
F040401	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29645_1028001	F040401	N/A	PWEALCVDLIGPYTLKGKDGSSIDFMALTMIDPASSWLEVVELPTITRVTTKKVNGKERTIEEEIFDKSSDRISSIS*
B570J29645_1028002	F000331	GGA	MRTAELDMADSVYPADIDTFIDNAVWAIRSTYHTVLKASPGAAIFGRDMLFDIPFVADWHKIGDYRQSQTDRSNIRENKKRVDYDYKVGDKVLIRKDGILRKAESIWKKEPWTITTVHTNGTIRIQCGTKSERINIRRVTPFSEELLI*