NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29645_100910

Scaffold B570J29645_100910


Overview

Basic Information
Taxon OID3300002390 Open in IMG/M
Scaffold IDB570J29645_100910 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2106
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007402Metagenome / Metatranscriptome352Y
F024000Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
B570J29645_1009101F024000N/AMSSILLTELTDQECEKGQLTQRPPIPYAISKAEITSKASRETVKMKTPEGEVKLAVLGDSPGAEEYLQHHNAFLRFLARKKIDVEMTKVTKAVAKATALVRVLARIPNEETEPEMTLRISRWEAAEEELTKTEAQESTQVGLVYDLFRKTLKDDPELQWDRIVEDMHLKDPWEDLRGVKHDGLRRKSVKSLQDCIDFHKLTVYSVDAAERQRFYMMCNLKKPAKSSIRAHVTRMETLNKHLGLLPTIKNSPQAVASTELGNVPFNETTLASIILSHLPVAWRTQYALTHALVPESPRAILVDLENIEKLFAEKANEAARANKAKVAATAKLAGEQVPRKGKRAHGGGPDKGTPKKGRTDKFCKWCKAVDGPFTT
B570J29645_1009102F007402N/AHHAGKFLPKTKGFFPHDFTLIASVVGESVIGHGIGGKYIPIMARLAKARRWSKR*
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