NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29645_100001

Scaffold B570J29645_100001


Overview

Basic Information
Taxon OID3300002390 Open in IMG/M
Scaffold IDB570J29645_100001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36360
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (18.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001640Metagenome / Metatranscriptome659Y
F004839Metagenome / Metatranscriptome421N
F021732Metagenome / Metatranscriptome217Y
F100712Metagenome102N

Sequences

Protein IDFamilyRBSSequence
B570J29645_10000127F021732N/AMNVTKYTCKCTLDKKKGHFVHVIFSHGFGLYGQTSPHSPEDNIEIHGWTFEPHDIDLELYPKINRYNLMPLVAENEMDWVIINN*
B570J29645_1000013F100712N/AMLIELQILADDIAQMAIEAVANEWKAQGHNLTGAAIKNMETVIRFQTNELIIEGYVPEYMAINNKGVLATKIPYYPGSGRKESEYIKGLMRYAKQRFGASDKESKSIAFAIASKHKKEGMPTIKSQKHSKTGKRTGFIEEALDKKQAEMSDLINRAITYSIETTVETFYKSILNR*
B570J29645_10000145F004839N/AMEKNFNNLQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATLVALVEIFFGLQEKYEGGEFITMFLFVGTIIVFGYLLEINFVDKGVEAYGINAPEPKPKRKRKPRVKVEAKENNETTGTAKNFVSSFKTITL*
B570J29645_10000153F001640N/AMRYLFLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTLAIHAKPIITKGKAVQRINYYNDLHVQISGKPVYFTTAQRDTAKFLGDWKLNFNGEIIDGVIELNNNKRLIFNPDNGKVYTISTNLLLSTFTNQITFSFNGVRYDLYKFGNGRFATVENDVRLIKKE*
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