NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29643_101833

Scaffold B570J29643_101833


Overview

Basic Information
Taxon OID3300002389 Open in IMG/M
Scaffold IDB570J29643_101833 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1166
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylovorus → Methylovorus glucosotrophus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015718Metagenome / Metatranscriptome252Y
F023805Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
B570J29643_1018332F015718AGGAMDDINEKYPVTNVMWKYMDSMTLGEYLASLGVDYKSYGFIKGFPRSFYLRIGFYKPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGSDIYNCYVHVTTVNGKSVYCVDVLN*
B570J29643_1018333F023805N/AVIKLKDILLEGKPPTIFVPRRLEDRVERMIKNYIRNGNKGNLLLSDLNLTKLPDILKDIDVGGSFACSNNKLTSLNNLPKYVGKSFYCDNNKLTSL

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