Scaffold B570J29643_101833

Overview

Basic Information

• Taxon OID: 3300002389
• Scaffold ID: B570J29643_101833
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1166
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylovorus → Methylovorus glucosotrophus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015718	Metagenome / Metatranscriptome	252	Y
F023805	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29643_1018332	F015718	AGGA	MDDINEKYPVTNVMWKYMDSMTLGEYLASLGVDYKSYGFIKGFPRSFYLRIGFYKPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGSDIYNCYVHVTTVNGKSVYCVDVLN*
B570J29643_1018333	F023805	N/A	VIKLKDILLEGKPPTIFVPRRLEDRVERMIKNYIRNGNKGNLLLSDLNLTKLPDILKDIDVGGSFACSNNKLTSLNNLPKYVGKSFYCDNNKLTSL