Scaffold B570J29604_1000291

Overview

Basic Information

• Taxon OID: 3300002383
• Scaffold ID: B570J29604_1000291
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 15JUN2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4234
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011293	Metagenome	292	Y
F013406	Metagenome	271	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29604_10002912	F011293	N/A	MRVLHCQNHREEKVSSNIDPGDAAYRAWQLTKNGERMEQYGHPFTDYTMVRRIFGVLTNFKHNLTVQEAIMFMVAVKLARLMKSLDNEKMHEDSLVDAIGYLNCLHMADARDQLLDAPLHVVGDMEIWRDKPTKGKTLWSRFKSYYKAQQ*
B570J29604_10002913	F013406	GAG	MNPLAVIALALSGLFGVTLAVTSDPQTDTIGLVSESTVYTAPLSGTVDLDTASDASGSPESVVTTMPPYTGPGCREWADTALRAGFVVDDLWLALQVAELESACLPNAIGDNGQSFGLMQIHTPSWCQPNKYWPRGYLQTKGMIDDCAELFDPLTNLWVAWHIATNYGWENWSTYNNVVG