Scaffold B570J29648_100410

Overview

Basic Information

• Taxon OID: 3300002382
• Scaffold ID: B570J29648_100410
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3250
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028150	Metagenome / Metatranscriptome	192	Y
F065716	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29648_1004107	F028150	AGAAGG	MNMNWLKKWGFAALNENFTFLGFXVAWVVLEGSAKTVVGYVTXASVALWFLTIGIREKSEKDE*
B570J29648_1004108	F065716	N/A	IPVEVREDINGNPVVIQAEVASALLVLESPAALANAIATCFNPDEEIEGLTEEQKCELGKALINIGADMSIPEREKAEDIVVVTIIAGQIVLGTAYRRKV*