Scaffold JGI24500J29687_10109568

Overview

Basic Information

• Taxon OID: 3300002377
• Scaffold ID: JGI24500J29687_10109568
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 2 RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1681
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y
F075995	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24500J29687_101095681	F047639	AGGAG	MRFLNKHKYLRVIKFHSDKSSTITYHLSSKFKPNFLINPDHIFIYNGYRTVVITDKSAETINPLDFNSKFNASDFKTAIESKLITDTFSTLKHNLFDKVTILLILNLVITLGILYFLLKSQGVM*
JGI24500J29687_101095682	F029085	AGG	MKDIKNEKLNINELLEENINEQLENGSSDLVSLIAISELTNLEKLKVITRLKEEQVPILTKLYMYAETFNVPFVKNMADNILQLQISIRGLGRKELVNIVRESTPTEVKRSLFGTKEVFR
JGI24500J29687_101095684	F075995	AGGAG	VRSRYMPLRKANVYIMTNDFKKLFYGMRTLYAKDCTGKKYIRYKNRYYPVFYDGYHTYIARIKR*