Scaffold JGI24500J29687_10026893

Overview

Basic Information

• Taxon OID: 3300002377
• Scaffold ID: JGI24500J29687_10026893
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 2 RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3222
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24500J29687_100268934	F047639	AGGAGG	MRFLNKHKYLRVIKFNSDKSSTITYHLSSKFKPNFLINPDHIFLYNGYRTVVITDKSAETINPLDFNSKFNSNDFKTAIESKLIKDTFSTLKHNLFDKVTILLILNLVITLGVLYFLLKSQGVI*
JGI24500J29687_100268935	F029085	AGG	LKDIKNEKLNINELLEENINEQLENGSSDLVSLIAITELTNLDKLKVITRIKEEQVPVLTKLYMYAETFNIPFVKNMADNILQLQVSIRGLGRKELVNIVRESTPTEVKRGLFGTKEVFR