NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20171J29575_12581689

Scaffold JGI20171J29575_12581689


Overview

Basic Information
Taxon OID3300002308 Open in IMG/M
Scaffold IDJGI20171J29575_12581689 Open in IMG/M
Source Dataset NameNasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2609
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000032Metagenome4750Y
F000505Metagenome1071Y

Sequences

Protein IDFamilyRBSSequence
JGI20171J29575_125816891F000032GGAMEKISWTNHVRNEEVLFRVKGQRNILHKICKRKANWIGHILRRNCLLQRVIEGKIQGGIE
JGI20171J29575_125816892F000505N/AMHKSQSLFYLIIALHVSGVIITHLQEHKTTASAASGNRYTVIDRVKFTDKGYR*

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