NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20171J29575_11870326

Scaffold JGI20171J29575_11870326


Overview

Basic Information
Taxon OID3300002308 Open in IMG/M
Scaffold IDJGI20171J29575_11870326 Open in IMG/M
Source Dataset NameNasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)639
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Namelaboratory colony in Florida, USA
CoordinatesLat. (o)26.0625Long. (o)-80.2332Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000026Metagenome5546Y
F001035Metagenome796Y

Sequences

Protein IDFamilyRBSSequence
JGI20171J29575_118703261F000026AGAAGMHMLQSLFYLTIALHISGVTIAHLQENKTTVTTASGSLYTLLLSAAIVEELELV*VCC
JGI20171J29575_118703262F001035N/ASTNISTEYFKHAAHSRFSVQNAVYFIMLPFLVSVLFTFYIEGVLKFKCKTPVPKG*

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