Scaffold JGI24890J29729_1006975

Overview

Basic Information

• Taxon OID: 3300002307
• Scaffold ID: JGI24890J29729_1006975
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3380
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011059	Metagenome	295	Y
F054521	Metagenome	139	Y
F091218	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24890J29729_10069752	F091218	N/A	MPETAKVVDHFRTVFPKIKVIYAEEGQYRIGKKPDASKYVVPCISEPIVKKGKRK*
JGI24890J29729_10069753	F054521	AGGA	MSESIKDFPMEGAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQRQEWLKPAEPTPSPIVTE*
JGI24890J29729_10069759	F011059	GAG	MSKMTYDQWKARYMNEEGSNYDRDFRFKFISDYLLNPNLAAICRTHNVPYDTALSWKKKNWWYDMAEDLLQNHKDDLLAKQRQILEKTYSELGDRLQNGDEQYIPNEGHVRVKVRANHLATIADTTLKANQLLQGKATQISHVTIESLADKLRTITEEATFIDVTPKPLLDTTKG*