Scaffold JGI24890J29729_1000072

Overview

Basic Information

• Taxon OID: 3300002307
• Scaffold ID: JGI24890J29729_1000072
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87393
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (75.61%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F037030	Metagenome / Metatranscriptome	168	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071905	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24890J29729_1000072102	F041564	AGG	MQYDPSNEDHKEIMDYLVSEGAAILDGVDDEGEPIYRFDMELLEEVMPELHQVLIEDMDNILIDLYQKDLIEVSYDENLNAKIAISEEGKIALMQAGFDLDNSEDEDF*
JGI24890J29729_1000072105	F019426	GGA	MYLRKEVMRVLVFGAKDYTDYNELIRQVTVLLDDRKHFYPEDKEYVFVHTGLRGAENMITEYIGKTEKYLRQKGFKIKEELVRDTSSYSDVTLIESIPDFALVFGISERNKSCIKLLEAYGIPFRFIKE*
JGI24890J29729_1000072109	F028070	N/A	MAKKIRQVKPPVKNLILDVRARPNYLALTVYESNIMEYNESQRMQVMEYLLMIRQLIQSYGTPCEIEGMKYTHEQARALRRKQ*
JGI24890J29729_1000072111	F064358	GGA	MQCFSCGKQKNELQPKKSAIINGVTLFMCQSCLDEKLEPRWVVILGGRQNGADSVRDYIVKRRYIGRPISAEELIA*
JGI24890J29729_10000723	F037030	AGGAGG	MNNENIARIRIALGMCFVSIITLLFGINSSSATQLXENLVYNKNILYINKYINIVNIKDIINIDYINNNNKKIKSKTLYLINDLTSRSTFTMPDYSIMLNLKSRVDKRVIISRLANGIKSQETGGASAYFRHSYSSSACGAYQYMPSTWDNFMGYKTACQAPAWVQDQRIVHELEYNYNRFHDWRKAVAAHLMPSRANNMNTWTRAVPGNPTVAQYVNGVFAKANMTPITC*
JGI24890J29729_100007269	F028168	AGG	MTEKPVIELISELSEFNDMKSYMNDPDLDYALDLIIKLIAKPDVPSTKAPDLIVKMQALSSKFAMMSRYYTTFEKGGENSKKKNVYYTAEEAINRLVDALKYSARYGA*
JGI24890J29729_100007273	F071905	N/A	MKLYDSKDWVYKRYVLEKKTIREMAMEARCSHMTIQRELERHGFIKKPRKWTK*
JGI24890J29729_100007280	F042147	AGG	MLANGTMKTIEDEEDIYVSLTQLCEYFAQSVANMTKEVKAANPRDKRYAQGLVDMMHTIAEEIVQLGKYEAQRRMIENPEDLFGIIDKYKDKE*