Scaffold JGI24890J29729_1000070

Overview

Basic Information

• Taxon OID: 3300002307
• Scaffold ID: JGI24890J29729_1000070
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87943
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (72.07%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020647	Metagenome / Metatranscriptome	222	Y
F096598	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24890J29729_100007060	F020647	AGGA	MFETCAKQLVLVTLTNQKVVTEFYNGTLFVRTITEDQARSVFHAFCKSLGQGKVQVSPIGDTGEYAYDFI*
JGI24890J29729_100007090	F096598	AGGAG	MATIARTNGWARPTDSGNVSVTGRTLTHYTVTLAGLYDFGNGTIKNYAAAGSDFEKIVLAIESVGSIELLGAPQTGNLFHVAISGAAPSAPVLQSYVNTSANVGGGGVSGTSVALFTY*